Data Collection, Integration
   and Reduction

HKL
MOSFLM
ROTGEN

Phasing

Chooch
MADSYS
PRISM
Shake and Bake
SHARP + Buster
  SHARP user manual
SHELX
Solomon
Solve

Molecular Replacement

EPMR
Como
Fffear
Molrep
Replace
Amore


NYSGRC Molecular Replacement server

Refinement

ARP/wARP
CNS
Refmac
XPLOR
  Index of /hypermail/X-PLOR/
  XPLOR Frequently Asked Questions
  XPLOR v3.1 On-line Manual

Model Building

How to O
A to Z of O
Essential O
XtalView

Display

LIGPLOT
SETOR
SQUID
GRASP
MolScript
  Tutorial
Pymol
SPOCK

General

Autodep at PDB
Bioperl
CCMS - Computational Center for Macromolecular Structures
CCP4
Guoguang's Programs
FINDNCS
MAIN
NAOMI
Procheck
Uppsala Software Factory
DDQ
Dali server
TOPS
3D-pssm fold recognition server
3D overlap structures (2ary structure analysis)
Whatcheck
Autostruct